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Docs: Include internal cmds in toctree
Also fixing some missing refs (using single backticks instead of double).
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@ -96,7 +96,7 @@ Verilog Attributes and non-standard features
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- The ``keep_hierarchy`` attribute on cells and modules keeps the `flatten`
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command from flattening the indicated cells and modules.
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- The `gate_cost_equivalent` attribute on a module can be used to specify
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- The ``gate_cost_equivalent`` attribute on a module can be used to specify
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the estimated cost of the module as a number of basic gate instances. See
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the help message of command `keep_hierarchy` which interprets this
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attribute.
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